- Sackets Harbor (Population: 1,386)
- Sag Harbor (Population: 2,313)
- Salamanca (Population: 6,097)
- Salem (Population: 2,702)
- Salina (Population: 33,290)
- Salisbury (Population: 1,953)
- Sand Lake (Population: 7,987)
- Sands Point (Population: 2,786)
- Sandy Creek (Population: 3,863)
- Sanford (Population: 2,477)
- Sangerfield (Population: 2,610)
- Saranac Lake (Population: 5,041)
- Saranac (Population: 4,165)
- Saratoga (Population: 5,141)
- Saratoga Springs (Population: 26,186)
- Sardinia (Population: 2,692)
- Saugerties (Population: 19,868)
- Saugerties South (Population: 2,285)
- Savannah (Population: 1,838)
- Sayville (Population: 16,735)
- Scarsdale (Population: 17,823)
- Schaghticoke (Population: 7,456)
- Schenectady (Population: 61,821)
- Schodack (Population: 12,536)
- Schoharie (Population: 3,299)
- Schroeppel (Population: 8,566)
- Schroon (Population: 1,759)
- Schuyler Falls (Population: 5,128)
- Schuyler (Population: 3,385)
- Schuylerville (Population: 1,197)
- Scio (Population: 1,914)
- Scipio (Population: 1,537)
- Scotchtown (Population: 8,954)
- Scotia (Population: 7,957)
- Scott (Population: 1,193)
- Scottsville (Population: 2,128)
- Scriba (Population: 7,331)
- Sea Cliff (Population: 5,066)
- Seaford (Population: 15,791)
- Searingtown (Population: 5,034)
- Selden (Population: 21,861)
- Seneca Falls (Population: 9,347)
- Seneca Knolls (Population: 2,138)
- Seneca (Population: 2,731)
- Sennett (Population: 3,244)
- Setauket-East Setauket (Population: 15,931)
- Seward (Population: 1,637)
- Shandaken (Population: 3,235)
- Sharon (Population: 1,843)
- Shawangunk (Population: 12,022)
- Shelby (Population: 5,420)
- Sheldon (Population: 2,561)
- Shelter Island (Population: 2,228)
- Shenorock (Population: 1,887)
- Sherburne (Population: 3,979)
- Sheridan (Population: 2,838)
- Sherman (Population: 1,553)
- Sherrill (Population: 3,147)
- Shinnecock Hills (Population: 1,749)
- Shirley (Population: 25,395)
- Shokan (Population: 1,252)
- Shortsville (Population: 1,320)
- Shrub Oak (Population: 1,812)
- Sidney (Population: 6,109)
- Silver Creek (Population: 2,896)
- Skaneateles (Population: 7,323)
- Sleepy Hollow (Population: 9,212)
- Sloan (Population: 3,775)
- Sloatsburg (Population: 3,117)
- Smithfield (Population: 1,205)
- Smithtown (Population: 115,715)
- Smyrna (Population: 1,418)
- Sodus (Population: 8,949)
- Sodus Point (Population: 1,160)
- Solon (Population: 1,108)
- Solvay (Population: 6,845)
- Somers (Population: 18,346)
- Somerset (Population: 2,865)
- Sound Beach (Population: 9,807)
- South Bristol (Population: 1,645)
- South Corning (Population: 1,147)
- South Fallsburg (Population: 2,061)
- South Farmingdale (Population: 15,061)
- South Floral Park (Population: 1,578)
- South Glens Falls (Population: 3,368)
- South Hempstead (Population: 3,188)
- South Hill (Population: 6,003)
- South Huntington (Population: 9,465)
- South Lockport (Population: 8,552)
- South Nyack (Population: 3,473)
- South Valley Stream (Population: 5,638)
- Southampton (Population: 54,712)
- Southeast (Population: 17,316)
- Southold (Population: 20,599)
- Southport (Population: 11,185)
- Spackenkill (Population: 4,756)
- Spafford (Population: 1,661)
- Sparta (Population: 1,627)
- Spencer (Population: 2,979)
- Spencerport (Population: 3,559)
- Spring Valley (Population: 25,464)
- Springfield (Population: 1,350)
- Springport (Population: 2,256)
- Springs (Population: 4,950)
- Springville (Population: 4,252)
- Springwater (Population: 2,322)
- St. Armand (Population: 1,321)
- St. Bonaventure (Population: 2,127)
- St. James (Population: 13,268)
- St. Johnsville (Population: 2,565)
- Stafford (Population: 2,409)
- Stamford (Population: 1,943)
- Stanford (Population: 3,544)
- Starkey (Population: 3,465)
- Stephentown (Population: 2,873)
- Sterling (Population: 3,432)
- Steuben (Population: 1,172)
- Stewart Manor (Population: 1,935)
- Stillwater (Population: 7,522)
- Stockbridge (Population: 2,080)
- Stockholm (Population: 3,592)
- Stockport (Population: 2,933)
- Stockton (Population: 2,331)
- Stone Ridge (Population: 1,173)
- Stony Brook (Population: 13,727)
- Stony Point (Population: 14,244)
- Stottville (Population: 1,355)
- Stuyvesant (Population: 2,188)
- Suffern (Population: 11,006)
- Sullivan (Population: 14,991)
- Summerhill (Population: 1,098)
- Summit (Population: 1,123)
- Sweden (Population: 13,716)
- Sylvan Beach (Population: 1,071)
- Syosset (Population: 18,544)
- Syracuse (Population: 147,306)
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